August 16, 2013

Publications

Center for Bioinformatics and Integrative Biology scientific publications and journal covers to date:

2017


 TITLEAUTHORSJOURNAL
88Multiscale molecular simulations applied to nucleic acid- dendrimer interactions studies.Márquez-Miranda V, Araya-Durán I, González-Nilo FD.Current Pharmaceutical Design. 2017. DOI: 10.2174/1381612823666170306093224
87Structural analysis of binding functionality of folic acid-PEG dendrimers against folate receptor.Sampogna-Mireles, D.; Araya-Duran, ID.; Marquez-Miranda, V.; Valencia-Gallegos, JA. Gonzalez-Nilo, FD.Journal of Molecular Graphics & Modelling. 2017. DOI: 10.1016/j.jmgm.2017.01.004
86The complex of PAMAM-OH dendrimer with Angiotensin (1–7) prevented the disuse-induced skeletal muscle atrophy in mice.Marquez-Miranda, V.; Abrigo, J.; Rivera, JC.; Araya-Duran, I.; Aravena, J; Simon, F.; Pacheco, N.; Gonzalez-Nilo, FD., Cabello-Verrugio, C.International Journal of Nanomedicine. 2017. DOI: 10.2147/IJN.S125521
85Intracellular trafficking and cellular uptake mechanism of PHBV nanoparticles for targeted delivery in epithelial cell lines.Penaloza, JP.; Marquez-Miranda, V.; Cabana-Brunod, M.; Reyes-Ramirez, R.; Llancalahuen, FM.; Vilos, C.; Maldonado-Biermann, F.; Velasquez, LA.; Fuentes, JA.; Gonzalez-Nilo, FD.; Rodriguez-Diaz, M.; Otero, C.Journal of Nanobiotechnology. 2017. DOI: 10.1186/s12951-016-0241-6
84Molecular Determinants of BK Channel Functional Diversity and Functioning.Latorre R, Castillo K, Carrasquel-Ursulaez W, Sepulveda RV, Gonzalez-Nilo F, Gonzalez C, Alvarez O. Physiological Reviews. 2017. DOI: 10.1152/physrev.00001.2016
83Antiplatelet effect of differentially charged PEGylated lipid-polymer nanoparticles.E Fuentes, B Yameen, SJ Bong, C Salvador-Morales, I Palomo, C Vilos.Nanomedicine: Nanotechnology, Biology and Medicine. 2017. DOI: 10.1016/j.nano.2016.10.010
82Proteína Morfogenética Ósea y su Opción como Tratamiento de la Fisura Alveolar.F Uribe, M Cantín, JP Alister, C Vilos, R Fariña, S Olate.International Journal of Morphology. 2017. DOI: 10.4067/S0717-95022017000100049
81Targeted brain delivery nanoparticles for malignant gliomas.MP Pinto, M Arce, B Yameen, C Vilos.Nanomedicine. 2017. DOI 10.2217/nnm-2016-0307
80Optimization of fibrin gelation for enhanced cell seeding and proliferation in regenerative medicine applications.WI Choi, B Yameen, C Vilos, A Sahu, SM Jo, D Sung, G Tae.Polymers for Advanced Technologies.2017. DOI: 10.1002/pat.3866
79Phosphoethanolamine addition to the Heptose I of the Lipopolysaccharide modifies the inner core structure and has an impact on the binding of Polymyxin B to the Escherichia coli outer membrane.Salazar J, Alarcón M, Huerta J, Navarro B, Aguayo D.Archives of Biochemistry and Biophysics. 2017. DOI: 10.1016/j.abb.2017.03.008.
78Draft Genome Sequences of Five Enterococcus Species Isolated from the Gut of Patients with suspected Clostridium difficile Infection.Eduardo Castro-Nallar, Sandro L. Valenzuela, Sebastián Baquedano, Carolina Sánchez, Fabiola Fernández, Annette Trombert.Genome Announcements. 2017. DOI: 10.1128/genomeA.00379-17
77DNA Barcoding analysis of seafood accuracy in Washington, DC restaurants.Stern, D. B., Castro-Nallar, E., Rathod, J., & Crandall, K. A. Peer J, 2017. DOI: 10.7717/peerj.3234
76Complete genome of Streptomyces sp. strain H-KF8, a marine halo- and psychro- tolerant bacterium exhibiting antibacterial activity isolated from a northern Chilean Patagonian fjord.Agustina Undabarrena; Juan A Ugalde; Eduardo Castro-Nallar; Michael Seeger; Beatriz Cámara.Genome Announcements. 2017. DOI: 10.1128/genomeA.01645-16
75Comparative genomics analysis of a new Exiguobacterium strain from Salar de Huasco reveals a repertoire of stress-related genes and arsenic resistance.Juan Castro-Severyn,  Francisco Remonsellez,  Sandro Luis Valenzuela,  Jonathan Fortt,  Pablo Aguilar, Coral Pardo-Esté,  Cristina Dorador,  Raquel Quatrini,  Franck Molina,  Eduardo Castro-Nallar, Claudia P Saavedra.Frontiers in Microbiology. 2017. DOI: 10.3389/fmicb.2017.00456
74Multilocus Sequence Typing of Pathogens.Pérez-Losada M., Arenas, M., and Castro-Nallar, E. Genetics and Evolution of Infectious Diseases. 2017. DOI: 10.1016/B978-0-12-799942-5.00016-0
73Multi-level evaluation of Escherichia coli polyphosphate related mutants using global transcriptomic, proteomic and phenomic analyses.Varas M, Valdivieso C, Mauriaca C, Ortíz-Severín J, Paradela A, Poblete-Castro I, Cabrera R, Chávez FP.Biochemica et Biophysica acta. 2017. DOI: 10.1016/j.bbagen.2017.01.007
72Datasets for transcriptomics, q-proteomics and phenotype microarrays of polyphosphate metabolism mutants from Escherichia coli.Macarena Varas, Camilo Valdivieso, Cecilia Mauriaca,a Javiera Ortíz-Severín, Alberto Paradela, Ignacio Poblete-Castro, Ricardo Cabrera, Francisco P. Cháveza.Data Brief. 2017. DOI: 10.1016/j.dib.2017.03.010
71Batch Cultivation Model for Biopolymer Production.C. E. Torres-Cerna, A. Y. Alanis,a,I. Poblete-Castro, E. A. Hernandez-Vargas.Chemical and Biochemical Engineering Quarterly. 2017. DOI: 10.15255/CABEQ.2016.952

2016


 TITLEAUTHORSJOURNAL
70Ultrastructure Variability of the Exosporium Layer of Clostridium difficile Spores from Sporulating Cultures and BiofilmsPizarro-Guajardo, Marjorie; Calderon-Romero, Paulina; Paredes-Sabja, D.;Paredes-Sabja, Daniel.Applied and Environmental Microbiology. 2016. DOI: 10.1128/AEM.01463-16.
69Characterization of the Adherence of Clostridium difficile Spores: The Integrity of the Outermost Layer Affects Adherence Properties of Spores of the Epidemic Strain R20291 to Components of the Intestinal MucosaMora-Uribe, Paola; Miranda-Miranda-Cardenas, Camila; Castro-Cordova, Pablo; Gil, Fernando; Calderon, Calderon, Ivan; Fuentes, Juan A.; Rodas, Paula I.; Banawas, Saeed; Sarker, Mahfuzur R.; Paredes-Sabja, Daniel.Frontiers in Cellular and Infection Microbiology. 2016. DOI: 10.3389/fcimb.201.00099.
68Acyldepsipeptide antibiotics as a potential therapeutic agent against Clostridium difficile recurrent infectionsGil, Fernando; Paredes-Sabja, Daniel.Future Microbiology. 2016. DOI: 10.2217/fmb-2016-0064.
67Draft Genome Sequence of a Multi-Metal Resistant Bacterium Pseudomonas putida ATH-43 Isolated from Greenwich Island, Antarctica.
Rodríguez-Rojas F., Tapia P., Castro-Nallar E., Undabarrena A., Muñoz-Díaz P., Arenas-Salinas M., Díaz-Vásquez W., Valdés J., Vásquez C.Frontier in Microbiology. 2016. DOI: 10.3389/fmicb.2016.01777.
66Metataxonomic and Metagenomic Approaches vs. Culture-Based Techniques for Clinical PathologySarah K. Hilton, Eduardo Castro-Nallar, Marcos Pérez-Losada, Ian Toma, Timothy A. McCaffrey, Eric P. Hoffman, Marc O. Siegel, Gary L. Simon, W. Evan Johnson and Keith A. Crandall.Frontier in Microbiology. 2016. DOI: 10.3389/fmicb.2016.00484
65beta 1-subunit-induced structural rearrangements of the Ca2+- and voltage-activated K+ (BK) channelCastillo JP., Sánchez-Rodríguez JE., Hyde HC., Zaelzer CA., Aguayo D., Sepúlveda RV., Luk LY., Kent SB., Gonzalez-Nilo FD., Bezanilla F., Latorre R.Proceedings of the National Academy of the Sciences of the United States of America. 2016. DOI: 10.1073/pnas.1606381113.
64Putative binding mode of Escherichia coli exopolyphosphatase and polyphosphates based on a hybrid in silico/biochemical approach.
Boetsch C., Aguayo-Villegas DR., Gonzalez-Nilo FD., Lisa ÁT., Beassoni PR.
Archives of Biochemistry Biophysics. 2016. DOI: 10.1016/j.abb.2016.07.005.
63Docking and Molecular Dynamics of Steviol Glycoside-Human Bitter Receptor InteractionsAcevedo, Waldo; Gonzalez-Nilo, Fernando; Agosin, Eduardo.Journal of Agricultural and Food Chemistry. 2016. DOI: 10.1021/acs.jafc.6b02840.
62Structure-Driven Pharmacology of Transient Receptor Potential Channel Vanilloid 1Diaz-Franulic, Ignacio; Caceres-Molina, Javier; Sepulveda, Romina V.; Gonzalez-Nilo, Fernando; Latorre, Ramon.
Molecular Pharmacology. 2016. DOI: 10.1124/mol.116.104430.
61Mechanistic Studies on the Self-Assembly of PLGA Patchy Particles and Their Potential Applications in Biomedical ImagingC. Salvador-Morales, Binal Brahmbhatt, V. Márquez-Miranda, I. Araya-Duran, J. Canan, F. Gonzalez-Nilo, C. Vilos,  J. Cebral, F. Mut, R. Lohner, B. Leong, G. Sundaresan, and J. Zweit.Langmuir. 2016. DOI: 10.1021/acs.langmuir.6b02177.
60Self-Assembly of Amphiphilic Dendrimers: The Role of Generation and Alkyl Chain Length in siRNA Interaction
Márquez-Miranda, Valeria; Araya-Durán, Ingrid; Camarada, María Belén; Comer, Jeffrey; Valencia-Gallegos, Jesús A.; González-Nilo, Fernando DaniloScientific Reports. 2016. DOI: 10.1038/srep29436.
59Effect of Terminal Groups of Dendrimers in the Complexation with Antisense Oligonucleotides and Cell UptakeValeria Márquez-Miranda, Juan Pablo Peñaloza, Ingrid Araya-Durán, Rodrigo Reyes, Soledad Vidaurre, Valentina Romero, Juan Fuentes, Francisco Céric, Luis Velásquez, Fernando D. González-Nilo, Carolina Otero.Nanoscale Research Letters. 2016. DOI: 10.1186/s11671-016-1260-9.
58Effective pore size and radius of capture for K+ ions in K-channelsMoldenhauer H., Díaz-Franulic., González-Nilo F.,Naranjo D.Scientific Reports. 2016. DOI: 10.1038/srep19893.
57Location of TEMPO derivatives in micelles: subtle effect of the probe orientation
Aliaga, Carolina; Bravo-Moraga, Felipe; Gonzalez-Nilo, Danilo; Marquez, Sebastian; Luehr, Susan; Mena, Geraldine; Caroli Rezende, Marcos.Food Chemistry. 2016. DOI: 10.1016/j.foodchem.2015.07.036
56Pigments from UV-resistant Antarctic bacteria as photosensitizers in Dye Sensitized Solar Cells
Ordenes-Aenishanslins, N.; Anziani-Ostuni, G.; Vargas-Reyes, M.; Alarcon, J.; Tello, A.; Perez-Donoso, JM.Journal of Photochemistry and Photobiology B-Biology. DOI: 10.1016/j.jphotobiol.2016.08.004.
55The Porphyromonas gingivalis O antigen is required for inhibition of apoptosis in gingival epithelial cells following bacterial infectionSoto C., Bugueño I., Hoare A., Gonzalez S., Venegas D., Salinas D., Melgar-Rodríguez S., Vernal R., Gamonal J., Quest AF., Pérez-Donoso JM., Bravo D.Journal of Periodontal Research. 2016. DOI: 10.1111/jre.12331
54Biological synthesis of fluorescent nanoparticles by cadmium and tellurite resistant Antarctic bacteria: exploring novel natural nanofactories
Plaza, DO.; Gallardo, C.; Straub, YD.; Bravo, D.; Perez-Donoso, JM.Microbial Cell Factories. 2016. DOI: 10.1186/s12934-016-0477-8.
53Integrated analysis of gene expression and metabolic fluxes in PHA-producing Pseudomonas putida grown on glycerolBeckers, V.; Poblete-Castro, I.; Tomasch, J.; Wittmann, C.Microbial Cell Factories. 2016, DOI: 10.1186/s12934-016-0470-2
52Targeted nanoparticles for colorectal cancer
Cisterna, BA.; Kamaly, N.; Choi, WI.; Tavakkoli, A.; Farokhzad, OC.; Vilos, C.Nanomedicine. 2016. DOI: 10.2217/nnm-2016-0194
51Techniques of Structural Characterization of DendrimersLizama, OV.; Vilos, C.; Duran-Lara, E.Current Organic Chemeistry. 2016. DOI:10.2174/1385272820666160608095009.
50Allosterism and Structure in Thermally Activated Transient Receptor Potential Channels.
Diaz-Franulic I1,2,3, Poblete H4, Miño-Galaz G1,2, González C2, Latorre R2.Annual Review of Biophysics. 2016. DOI: 10.1146/annurev-biophys-062215-011034.
49Conformational Changes of Enzymes and Aptamers Immobilized on Electrodes.Tello A1, Cao R2, Marchant MJ2, Gomez H2.
Author
Bioconjugate Chemistry. 2016. DOI: 10.1021/acs.bioconjchem.6b00553
48Genome Sequence of Clostridium paraputrificum 373-A1 Isolated in Chile from a Patient Infected with Clostridium difficileGuerrero-Araya E., Plaza-Garrido, Díaz-Yañez, Pizaro-Guajardo M., Valenzuela SL, Meneses C, Gil, Castro-Nallar E5, Paredes-Sabja D.Genome Announcement. 2016. DOI: 10.1128/genomeA.01178-16.
47Lose to win: marT pseudogenization in Salmonella enterica serovar Typhi contributed to the surV-dependent survival to H2O2, and inside human macrophage-like cells.Ortega AP, Villagra NA, Urrutia IM, Valenzuela LM, Talamilla-Espinoza A, Hidalgo AA, Rodas PI, Gil F, Calderón IL, Paredes-Sabja D, Mora GC, Fuentes J.Infection, Genetics and Evolution. 2016. DOI: 10.1016/j.meegid.2016.08.029. Epub 2016 Aug 24.
46Salmonella Typhimurium exhibits fluoroquinolone resistance mediated by the accumulation of the antioxidant molecule H2S in a CysK-dependent manner.Frávega J, Álvarez R, Díaz F, Inostroza O, Tejías C, Rodas PI, Paredes-Sabja D, Fuentes JA, Calderón IL, Gil F.Journal Antimicrobial Chemotherapy. 2016 Dec;71(12):3409-3415. Epub 2016 Aug 15.
45Characterization of germinants and their receptors for spores of non-food-borne Clostridium perfringens strain F4969Banawas, S. , Paredes-Sabja, D.,Setlow, P., Sarker, MR.Microbiology-SGM. 2016. DOI: 10.1099/mic.0.000378.
44A feed-forward loop between SroC and MgrR small RNAs modulates the expression of eptB and the susceptibility to polymyxin B in Salmonella TyphimuriumAcuna, Lillian G., Barros, MJ. Penaloza, D.; Rodas, PI.; Paredes-Sabja, D., Fuentes, Juan A., Gil, F., Calderon, IL.Microbiology-SGM. 2016. DOI: 10.1099/mic.0.000365.
43Ultrastructural Variability of the Exosporium Layer of Clostridium difficile SporesPizarro-Guajardo, Marjorie; Calderon-Romero, Paulina; Castro-Cordova, Pablo; Mora-Uribe, Paola; Paredes-Sabja, Daniel.Applied and Environmental Microbiology. 2016. DOI: 10.1128/AEM.03410-15.
42Redefining Healthy Urine: A Cross-Sectional Exploratory Metagenomic Study of People With and Without Bladder DysfunctionGroah, SL; Perez-Losada, M.; Caldovic, L.; Ljungberg, IH.; Sprague, BM.; Castro-Nallar, E.; Chandel, Neel J.; Hsieh, Michael H.; Pohl, Hans G.Journal of Urology. 2016. DOI: 10.1016/j.juro.2016.01.088.
41Effect of Several HIV Antigens Simultaneously Loaded with G2-NN16 Carbosilane Dendrimer in the Cell Uptake and Functionality of Human Dendritic CellsDaniel Sepúlveda-Crespo, Enrique Vacas-Córdoba, Valeria Márquez-Miranda, Ingrid Araya-Durán, Rafael Gómez, Francisco Javier de la Mata, Fernando Danilo González-Nil, Ma Ángeles Muñoz-Fernández.Bioconjugate Chemistry., Article ASAP. 2016. DOI: 10.1021/acs.bioconjchem.6b00623.
40Use of acidophilic bacteria of the genus Acidithiobacillus to biosynthesize CdS fluorescent nanoparticles (quantum dots) with high tolerance to acidic pHUlloa G, Collao B, Araneda M., Escobar B., Álvarez S., Bravo D., Pérez-Donoso JM..Enzyme Microb Technol. 2016. DOI: 10.1016/j.enzmictec.2016.09.005.
39Chitosan functionalized thermosponge nano-carriers for prolonged retention and local delivery of chymopapain at the nucleus pulposus in porcine discs ex vivoChoi, WI.; Sahu, A.; Vilos, C.; Lee, JH.; Kim, S.; Hong, YK.; Sul, D.; Hwang, SW.; Lee, SH.; Tae, G.RSC Advances. 2016. DOI: 10.1039/c6ra17848k.
38Mechanistic Studies on the Self-Assembly of PLGA Patchy Particles and Their Potential Applications in Biomedical ImagingSalvador-Morales, C.; Brahmbhatt, B.; Marquez-Miranda, V.; Araya-Duran, I.; Canan, J.; Gonzalez-Nilo, F.; Vilos, C.; Cebral, J.; Mut, F.; Lohner, R.; Leong, B.; Sundaresan, G.; Zweit, J.LANGMUIR. DOI: 10.1021/acs.langmuir.6b02177.
37Optimization of fibrin gelation for enhanced cell seeding and proliferation in regenerative medicine applicationsWon Il Choi, Basit Yameen2, Cristian Vilos, Abhishek Sahu, Seong-Min Jo, Daekyung Sung, Giyoong Tae.Polymers for Advanced Technologies. 2016. DOI: 10.1002/pat.3866.
36Pore size matters for potassium channel conductance.Naranjo D, Moldenhauer H, Pincuntureo M, Díaz-Franulic, I.Journal General Physiology. 2016. DOI: 10.1085/jgp.201611625.

2015


 TITLEAUTHORSJOURNAL
35Synthesis and characterization of an insoluble polymer based on polyamidoamine: applications for the decontamination of metals in aqueous systems.Valdés O, Vergara CE, Camarada MB, Carrasco-Sánchez V, Nachtigall FM, Tapia J, Fischer R, González-Nilo FD, Santos LS.Journal of Environmental Management. 2015. DOI: 10.1016/j.jenvman.2014.09.021.
34Hydrophobic interaction between contiguous residues in the S6 transmembrane segment acts as a stimuli integration node in the BK channelWilly Carrasquel-Ursulaez, Gustavo F. Contreras, Romina V. Sepúlveda, Daniel Aguayo, Fernando González-Nilo, Carlos González, and Ramón LatorreJournal of Generel Physioloy. 2015.DOI: 10.1085/jgp.201411194.
33Molecular Determinants of Phosphatidylinositol 4,5-Bisphosphate (PI(4,5)P-2) Binding to Transient Receptor Potential V1 (TRPV1) ChannelsHoracio Poblete; Ingrid Oyarzún; Pablo Olivero; Jeffrey Comer; Matías Zuñiga; Romina Sepulveda; David Báez-Nieto; Carlos González; Fernando González-Nilo, and Ramón Latorre.Journal of Biological Chemistry. 2015. DOI: 10.1074/jbc.M114.613620.
32A transient receptor potential ion channel in Chlamydomonas shares key features with sensory transduction-associated TRP channels in mammals.Arias-Darraz L, Cabezas D, Colenso CK, Alegría-Arcos M. Bravo-Moraga F, Varas-Concha I, Almonacid DE, Madrid R, and Brauchi S. The Plant Cell. 2015. DOI: 10.1105/tpc.114.131862.
31Experimental and theoretical binding affinity between polyvinylpolypyrrolidone and selected phenolic compounds from food matricesDurán-Lara EF., López-Cortés XA, Castro RI., Avila-Salas F, González-Nilo FD., Laurie VF., Santos LS.Food Chemistry. 2015. DOI: 10.1016/j.foodchem.2014.07.048.
30Hydrogen peroxide and hypochlorous acid influx through the major S. Typhimurium porin OmpD is affected by substitution of key residues of the channelAguayo D., Pacheco N., Morales EH., Collao B., Luraschi R., Cabezas C., Calderón P., González-Nilo F., Gil F., Calderón IL., Saavedra CP.Archives of Biochemistry and Biophysics. 2015, DOI: 10.1016/j.abb.2015.01.005.
29Cys-B-dependent upregulation of the Salmonella Typhimurium cysJIH operon in response to antimicrobial compounds that induce oxidative stress.Ricardo Álvarez, German Neumann, Jorge Frávega, Fernando Díaz, Cristóbal Tejías, Bernardo Collao, Juan A. Fuentes, Daniel Paredes-Sabja, Iván L. Calderón, Fernando Gil.Biochemical and Biophysical Research Communications, 2015. DOI: 10.1016/j.bbrc.2015.01.058.
28Nano-Detoxification of Organophosphate Agents by PAMAM DerivativesEsteban Durán-Lara; Fabian Ávila-Salas; Sebastian Galaz; Amalraj John; Adolfo Marican; Margarita Gutiérrez; Fabiane M. Nachtigall; Fernando D. Gonzalez-Nilo and Leonardo S. Santos. Journal of the Brazilian Chemical Society. 2015. DOI: 10.5935/0103-5053.20150013
27Synthesis, Biological Evaluation, and Molecular Simulation of Chalcones and Aurones as Selective MAO-B InhibitorsMorales-Camilo N, Salas CO, Sanhueza C, Espinosa-Bustos C, Sepúlveda-Boza S, Reyes-Parada M, Gonzalez-Nilo F, Caroli-Rezende M,Fierro A.Chemical Biology & Drug Design. 2015. DOI: 10.1111/cbdd.12458
26Changes in lipopolysaccharide profile of Porphyromonas gingivalis clinical isolates correlate with changes in colony morphology and polymyxin B resistanceDíaz L, Hoare A, Soto C, Bugueño I, Silva N, Dutzan N, Venegas D, Salinas D, Pérez-Donoso JM, Gamonal J, Bravo D.Anaerobe. 2015. DOI: 10.1016/j.anaerobe.2015.01.009
25Development of a nanoparticle-based oral vaccine for Atlantic salmon against ISAV using an alphavirus replicon as adjuvantRivas-Aravena A, Fuentes Y, Cartagena J, Brito T, Poggio V, La Torre J, Mendoza H, Gonzalez-Nilo F, Sandino AM, Spencer E.Fish & Shellfish Inmunology. 2015. DOI: 10.1016/j.fsi.2015.03.033.
24Allosteric Communication Pathways and Thermal Rectification in PDZ-2 Protein: A Computational StudyMiño-Galaz, German A.Journal of Physical Chemistry B. 2015. DOI: 10.1021/acs.jpcb.5b02228.
23Dual Transcriptomic Profiling of Host and Microbiota during Health and Disease in Pediatric Asthma.Pérez-Losada M, Castro-Nallar E, Bendall ML, Freishtat RJ, Crandall KA.Plos One. 2015. DOI: 10.1371/journal.pone.0131819
22Thermal- and photo-stability of glutathione-capped cadmium telluride Quantum DotsWansapura P., Díaz-Vásquez W., Vásquez C., Pérez-Donoso J.M. and Chasteen TJournal of Applied BioMaterials and Functional Materials. 2015. DOI: 10.5301/jabfm.5000221
21Hydrogen bonds and asymmetrical heat difFusion in α-helices. A computational analysis.German A. Miño-Galaz, Gonzalo Gutiérrez.Chemical Physics Letters.2015. DOI: 10.1016/j.cplett.2015.06.041
20Photophysical studies of the interactions of poly(amidoamine) generation zero (PAMAM G0) with copper and zinc ionsZ.E. López-Cabaña, O. Valdés, C.E. Vergara, M.B. Camarada, F.M. Nachtigall, F.D. González-Nilo, Leonardo S. SantosJournal of Luminescence. 2015.DOI: 10.1016/j.jlumin.2015.03.019.
19Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities.Castro-Nallar E, Shen Y, Freishtat RJ, Pérez-Losada M, Manimaran S, Liu G, Johnson WE, Crandall KA.BMC Medical Genomics. 2015. DOI: 10.1186/s12920-015-0121-1.
18Interaction between the Linker, Pre-S1, and TRP Domains Determines Folding, Assembly, and Trafficking of TRPV Channels.Garcia-Elias A, Berna-Erro A, Rubio-Moscardo F, Pardo-Pastor C, Mrkonjić S, Sepúlveda RV, Vicente R, González-Nilo F, Valverde MA.Structure. 2015. DOI: 10.1016/j.str.2015.05.018
17Pore dimensions and the role of occupancy in unitary conductance of Shaker K channelsIgnacio Díaz-Franulic, Romina V. Sepúlveda, Nieves Navarro-Quezada, Fernando González-Nilo, David NaranjoJournal of Generel Physiology. 2015.DOI: 10.1085/jgp.201411353.
16Location of TEMPO derivatives in micelles: subtle effect of the pore orientation.Aliaga C. Bravo-Moraga F, González-Nilo D, Márquez S, Luhr S, Mena G, Rezende MC. Food Chemistry. 2015. DOI: 10.1016/j.foodchem.2015.07.036.
15Draft Genome Sequence of the Phenol-Degrading Bacterium Pseudomonas putida H.Vizoso P, Pacheco N, Bastias-Molina M, Meneses C, Poblete-Castro I.Genome Announcement. 2015. DOI: 10.1128/genomeA.00936-15.
14Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls Eduardo Castro-Nallar, Matthew L. Bendall, Marcos Pérez-Losada, Sarven Sabuncyan, Emily G. Severance, Faith B. Dickerson, Jennifer R. Schroeder, Robert H. Yolken and Keith A. CrandallPeerJ. 2015. DOI: 10.7717/peerj.1140.
13Biomimetics: From Bioinformatics to Rational Design of Dendrimers as Gene CarriersValeria Márquez-Miranda, María Belén Camarada, Ingrid Araya-Durán, Ignacio Varas-Concha, Daniel Eduardo Almonacid, Fernando Danilo González-NiloPlos One. 2015. DOI: 10.1371/journal.pone.0138392
12Phosphorylation at the N-terminal finger subdomain of a viral RNA-dependent RNA polymeraseS Hernández, D Figueroa, S Correa, A Díaz, D Aguayo, RA VillanuevaEn revision en Biochemical and Biophysical Research Communications. 2015. DOI: 10.1016/j.bbrc.2015.08.082.
11The Porphyromonas gingivalis O-antigen is required for inhibition of apoptosis in gingival epithelial cells following bacterial infection.C. Soto, I. Bugueño, A. Hoare, S. Gonzalez, D. Venegas, D. Salinas, S. Melgar-Rodríguez, R. Vernal, J. Gamonal, A. F. G. Quest, J. M. Pérez-Donoso, D. BravoJournal of Periodontal Research.2015. DOI: 10.1111/jre.12331.

2014


 TITLEAUTHORSJOURNAL
10The C-Terminal Regions Have an Important Role in the Activity of the Ferroxidase Center and the Stability of Chlorobium tepidum FerritinBrito, Cristian; Matias, Catalina; Gonzalez-Nilo, Fernando D.Protein Journal. 2014. DOI: 10.1007/s10930-014-9552-3
9Quantum dot-based assay for Cu2+ quantification in bacterial cell cultureV. Durán-Toroa, A. Gran-Scheucha, N. Órdenes-Aenishanslinsa, J.P. Monrása, L.A. Saonaa, F.A. Venegasa, T.G. Chasteend, D. Bravoe, J.M. Pérez-Donoso.Analytical Biochemistry. 2014. DOI: 10.1016/j.ab.2014.01.001
8Isolation, identification and characterization of highly tellurite-resistant, tellurite-reducing bacteria from AntarcticaArenas, Felipe A.; Pugin, Benoit; Henriquez, Nicole A.; José M. Pérez-Donoso.Polar Science. 2014. DOI: 10.1016/j.polar.2014.01.001.
7The Structure-Function Linkage DatabaseAkiva, Eyal; Brown, Shoshana; Almonacid, Daniel E.Nucleic Research. 2014. DOI: 10.1093/nar/gkt1130

2013


 TITLEAUTHORSJOURNAL
6Penicillium purpurogenum produces two GH family 43 enzymes with beta-xylosidase activity, one monofunctional and the other bifunctional: Biochemical and structural analyses explain the differenceCristina Ravanal, Maria; Alegria-Arcos, Melissa; Danilo Gonzalez-Nilo, Fernando.Archives of Biochemistry and Biophysics. 2013. DOI: 10.1016/j.abb.2013.10.017.
5Calculating Position-Dependent Diffusivity in Biased Molecular Dynamics SimulationsComer, Jeffrey; Chipot, Christophe; Gonzalez-Nilo, Fernando D.Journal of Chemical Theory and Computation. 2013. DOI: 10.1021/ct300867e.

2012


 TITLEAUTHORSJOURNAL
4Molecular Basis of Drug Resistance in A/H1N1 VirusAriela Vergara-Jaque, Horacio Poblete, Eric H. Lee, Klaus Schulten, Fernando González-Nilo, and Christophe Chipot.Journal of Chemical Information and Modeling. 2012. DOI: 10.1021/ci300343w.
3K+ Conduction and Mg2+ Blockade in a Shaker Kv-Channel Single Point Mutant with an Unusually High ConductanceCristian Moscoso, Ariela Vergara-Jaque, Valeria Márquez-Miranda,‖ Romina V. Sepúlveda,‖ Ignacio Valencia,Ignacio Díaz-Franulic, Fernando González-Nilo, David Naranjo.Biophysical Journal. 2012. DOI: 10.1016/j.bpj.2012.08.015.
2Insight into the Properties of Cardiolipin Containing Bilayers from Molecular Dynamics Simulations, Using a Hybrid All-Atom/United-Atom Force FieldAguayo, Daniel; Gonzalez-Nilo, Fernando D.; Chipot, Christophe.Journal of Chemical Theory and Computation. 2012. DOI: 10.1021/ct200849k.
1Insight into the Properties of Cardiolipin Containing Bilayers from Molecular Dynamics Simulations, Using a Hybrid All-Atom/United-Atom Force FieldAguayo, Daniel; Gonzalez-Nilo, Fernando D.; Chipot, Christophe.Journal of Chemical Theory and Computation. 2012. DOI: 10.1021/ct200849k

Journal Covers

  1. 2001Mutation Arg336 to Lys in Saccharomyces cerevisiae phosphoenolpyruvate carboxykinase originates an enzyme with increased oxaloacetate decarboxylase activity.
  2. 2003Role of the Histidine Triad-like Motif in Nucleotide Hydrolysis by the Rotavirus RNA-packaging Protein NSP2*.
  3. 2008Intrinsic Electrostatic Potential in the BK Channel Pore: Role in Determining Single Channel Conductance and Block
  4. 2012: Insight into the Properties of Cardiolipin Containing Bilayers from Molecular Dynamics Simulations, Using a Hybrid All-Atom/United-Atom Force Field
  5. 2012Free-energy calculations help elucidate how new mutants of human influenza virus (A/H1N1) exhibit resistance to commercial antiviral drugs, and provide the atomic detail of the underlying mechanism.
  6. 2015Nano-Detoxification of Organophosphate Agents by PAMAM Derivatives.
  7. 2015Pore dimensions and the role of occupancy in unitary conductance of Shaker K channels.
  8. 2016Structure-Driven Pharmacology of Transient Receptor Potential Channel Vanilloid 1.
  9. 2016Putative binding mode of Escherichia coli exopolyphosphatase and polyphosphates based on a hybrid in silico/biochemical approach.